Références
La bibliographie complète du "MicroBiota Handbook" – les sources scientifiques originales qui se cachent derrière les numéros de référence apparaissant dans les chapitres.
Que contient la bibliographie ?
Cette annexe rassemble en un seul endroit la bibliographie complète du livre : toutes les références scientifiques citées dans les différents chapitres de l'ouvrage. Les numéros `[12]`, `[325]` et les autres qui figurent dans le corps du texte renvoient aux entrées listées ci-dessous – la numérotation est continue sur l'ensemble du livre, si bien qu'un même numéro de référence `[N]` renvoie toujours à la même source. La grande majorité des publications listées sont parues dans des revues à comité de lecture et sont également retrouvables dans les bases de données indexées (PubMed/NCBI, Crossref), auprès d'éditeurs professionnels reconnus.
Pourquoi y a-t-il un résumé sous chaque entrée ?
Sous chaque référence figure une synthèse de 5 à 6 phrases. Il ne s'agit pas du résumé officiel de l'article, mais d'un bref résumé en langage courant présentant le contexte de l'étude, la méthode utilisée, le principal résultat et sa portée clinique ou pratique. Son objectif est de permettre au lecteur de décider rapidement si la publication intégrale mérite d'être lue et si elle correspond à sa propre question ou à la situation du patient. Ces résumés vous aident à vous orienter même sans accès direct au texte intégral.
Comment l'utiliser ?
Sous chaque entrée, vous trouverez la ligne « Cité dans » : en cliquant sur le numéro de chapitre qui y figure, vous revenez à la partie du livre où la source est citée. À l'intérieur de ce chapitre, cliquer sur le marqueur `[N]` ramène le lecteur ici, à la bibliographie – vous pouvez donc circuler librement dans les deux sens. Cliquer sur la référence marquée « Lien » ouvre la publication sur le site de l'éditeur ou du NCBI, où – si l'article est librement accessible (open access) – le texte intégral peut également être lu.
Références
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Short summary of the cited reference is in preparation.
[16] Sinha R, Abu-Ali G, Vogtmann E et al. Assessment of Variation in Microbial Community Amplicon Sequencing by the Microbiome Quality Control (MBQC) Project Consortium. Nature Biotechnology. 2017. Link
Short summary of the cited reference is in preparation.
[18] Gloor GB, Macklaim JM, Pawlowsky-Glahn V, Egozcue JJ. Microbiome datasets are compositional: and this is not optional. Front Microbiol. 2017. Link
Short summary of the cited reference is in preparation.
[19] Costea PI, Zeller G, Sunagawa S et al. Towards Standards for Human Fecal Sample Processing in Metagenomic Studies. Nature Biotechnology. 2017. Link
Short summary of the cited reference is in preparation.
[21] McLaren MR, Willis AD, Callahan BJ. Consistent and Correctable Bias in Metagenomic Sequencing Experiments. eLife. 2019. Link
Short summary of the cited reference is in preparation.
[22] Sczyrba A, Hofmann P, Belmann P et al. Critical Assessment of Metagenome Interpretation -- A Benchmark of Metagenomics Software. Nature Methods. 2017. Link
Short summary of the cited reference is in preparation.
[28] Vétizou M, Pitt JM, Daillère R et al. Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota. Science. 2015. Link
Short summary of the cited reference is in preparation.
[36] Cammarota G, Ianiro G, Tilg H et al. European consensus conference on faecal microbiota transplantation in clinical practice. Gut. 2017. Link
Short summary of the cited reference is in preparation.
[59] Thaiss CA, Zeevi D, Levy M et al. Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis. Cell. 2014. Link
Short summary of the cited reference is in preparation.
[60] Benedict C, Vogel H, Jonas W et al. Gut microbiota and glucometabolic alterations in response to recurrent partial sleep deprivation in normal-weight young individuals. Mol Metab. 2016. Link
Short summary of the cited reference is in preparation.
[62] Clarke SF, Murphy EF, O'Sullivan O et al. Exercise and associated dietary extremes impact on gut microbial diversity. Gut. 2014. Link
Short summary of the cited reference is in preparation.
[93] Goldenberg JZ, Yap C, Lytvyn L et al. Probiotics for the prevention of Clostridium difficile-associated diarrhea in adults and children. Cochrane Database Syst Rev. 2017. Link
Short summary of the cited reference is in preparation.
[106] Wastyk HC, Fragiadakis GK, Perelman D et al. Gut-microbiota-targeted diets modulate human immune status. Cell. 2021. Link
Short summary of the cited reference is in preparation.
[122] Costantini L, Molinari R, Farinon B, Merendino N. Impact of Omega-3 Fatty Acids on the Gut Microbiota. Int J Mol Sci. 2017. Link
Short summary of the cited reference is in preparation.
[141] David LA, Maurice CF, Carmody RN et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2014. Link
Short summary of the cited reference is in preparation.
[154] Suez J, Korem T, Zeevi D et al. Artificial sweeteners induce glucose intolerance by altering the gut microbiota. Nature. 2014. Link
Short summary of the cited reference is in preparation.
[159] Chassaing B, Koren O, Goodrich JK et al. Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome. Nature. 2015. Link
Short summary of the cited reference is in preparation.
[161] Desai MS, Seekatz AM, Koropatkin NM et al. A dietary fiber-deprived gut microbiota degrades the colonic mucus barrier and enhances pathogen susceptibility. Cell. 2016. Link
Short summary of the cited reference is in preparation.
[162] Suez J, Cohen Y, Valdés-Mas R et al. Personalized microbiome-driven effects of non-nutritive sweeteners on human glucose tolerance. Cell. 2022. Link
Short summary of the cited reference is in preparation.
[172] Halmos EP, Power VA, Shepherd SJ, Gibson PR, Muir JG. A diet low in FODMAPs reduces symptoms of irritable bowel syndrome. Gastroenterology. 2014. Link
Short summary of the cited reference is in preparation.
[204] Allen JM, Mailing LJ, Niemiro GM et al. Exercise alters gut microbiota composition and function in lean and obese humans. Med Sci Sports Exerc. 2018. Link
Short summary of the cited reference is in preparation.
[213] Cryan JF, Dinan TG. Mind-altering microorganisms: the impact of the gut microbiota on brain and behaviour. Nat Rev Neurosci. 2012. Link
Short summary of the cited reference is in preparation.
[218] Dethlefsen L, Relman DA. Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci USA. 2011. Link
Short summary of the cited reference is in preparation.
[222] Forslund K, Hildebrand F, Nielsen T et al. Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature. 2015. Link
Short summary of the cited reference is in preparation.
[229] Maier L, Pruteanu M, Kuhn M et al. Extensive impact of non-antibiotic drugs on human gut bacteria. Nature. 2018. Link
Short summary of the cited reference is in preparation.
[234] Routy B, Le Chatelier E, Derosa L et al. Gut microbiome influences efficacy of PD-1–based immunotherapy against epithelial tumors. Science. 2018. Link
Short summary of the cited reference is in preparation.
[238] Dominguez-Bello MG, Costello EK, Contreras M et al. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci USA. 2010. Link
Short summary of the cited reference is in preparation.
[300] Goodrich JK, Waters JL, Poole AC et al. Human genetics shape the gut microbiome. Cell. 2014. Link
Short summary of the cited reference is in preparation.
[306] Mirzayi C, Renson A, Genomic Standards Consortium et al. Reporting Guidelines for Human Microbiome Research: The STORMS Checklist. Nature Medicine. 2021. Link
Short summary of the cited reference is in preparation.
[381] Househam AM, Peterson CT, Mills PJ, Chopra D. The effects of stress and meditation on the immune system, human microbiota, and epigenetics. Adv Mind Body Med. 2017. Link
Short summary of the cited reference is in preparation.
[382] Zeb F, Wu X, Chen L et al. Effect of time-restricted feeding on metabolic risk and circadian rhythm associated with gut microbiome in healthy males. Br J Nutr. 2020. Link
Short summary of the cited reference is in preparation.
[402] Feuerstadt P, Louie TJ, Lashner B et al. SER-109, an Oral Microbiome Therapy for Recurrent Clostridioides difficile Infection. New England Journal of Medicine. 2022. Link
Short summary of the cited reference is in preparation.
[476] Marotz CA, Sanders JG, Zuniga C et al. Improving Saliva Shotgun Metagenomics by Chemical Host DNA Depletion. Microbiome. 2018. Link
Short summary of the cited reference is in preparation.
[504] Gionchetti P, Rizzello F, Helwig U et al. Prophylaxis of pouchitis onset with probiotic therapy: a double-blind, placebo-controlled trial. Gastroenterology. 2003. Link
Short summary of the cited reference is in preparation.
[505] Bin-Nun A, Bromiker R, Wilschanski M et al. Oral probiotics prevent necrotizing enterocolitis in very low birth weight neonates. J Pediatr. 2005. Link
Short summary of the cited reference is in preparation.
[506] Sokol H, Pigneur B, Watterlot L et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci USA. 2008. Link
Short summary of the cited reference is in preparation.
[507] Costello SP, Hughes PA, Waters O et al. Effect of fecal microbiota transplantation on 8-week remission in patients with ulcerative colitis: a randomized clinical trial. JAMA. 2019. Link
Short summary of the cited reference is in preparation.
[508] Camilleri, M. Diagnosis and treatment of irritable bowel syndrome: a review. JAMA. 2021. Link
Short summary of the cited reference is in preparation.
[510] Verdu EF, Galipeau HJ, Jabri B. Novel players in coeliac disease pathogenesis: role of the gut microbiota. Nat Rev Gastroenterol Hepatol. 2015. Link
Short summary of the cited reference is in preparation.
[511] Kostic AD, Chun E, Robertson L et al. Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment. Cell Host Microbe. 2013. Link
Short summary of the cited reference is in preparation.
[513] Davar D, Dzutsev AK, McCulloch JA et al. Fecal microbiota transplant overcomes resistance to anti-PD-1 therapy in melanoma patients. Science. 2021. Link
Short summary of the cited reference is in preparation.
[514] Walters WA, Xu Z, Knight R. Meta-analyses of human gut microbes associated with obesity and IBD. FEBS Lett. 2014. Link
Short summary of the cited reference is in preparation.
[515] Vrieze A, Van Nood E, Holleman F et al. Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome. Gastroenterology. 2012. Link
Short summary of the cited reference is in preparation.
[516] Aron-Wisnewsky J, Vigliotti C, Witjes J et al. Gut microbiota and human NAFLD: disentangling microbial signatures from metabolic disorders. Nat Rev Gastroenterol Hepatol. 2020. Link
Short summary of the cited reference is in preparation.
[517] Stiemsma LT, Reynolds LA, Turvey SE, Finlay BB. The hygiene hypothesis: current perspectives and future therapies. ImmunoTargets Ther. 2015. Link
Short summary of the cited reference is in preparation.
[518] Parodi A, Paolino S, Greco A et al. Small intestinal bacterial overgrowth in rosacea: clinical effectiveness of its eradication. Clin Gastroenterol Hepatol. 2008. Link
Short summary of the cited reference is in preparation.
[519] Kang DW, Adams JB, Coleman DM et al. Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota. Sci Rep. 2019. Link
Short summary of the cited reference is in preparation.
[520] Sampson TR, Debelius JW, Thron T et al. Gut microbiota regulate motor deficits and neuroinflammation in a model of Parkinson's disease. Cell. 2016. Link
Short summary of the cited reference is in preparation.
[521] Liu RT, Walsh RFL, Sheehan AE. Prebiotics and probiotics for depression and anxiety: a systematic review and meta-analysis of controlled clinical trials. Neurosci Biobehav Rev. 2019. Link
Short summary of the cited reference is in preparation.
[522] Dominy SS, Lynch C, Ermini F et al. Porphyromonas gingivalis in Alzheimer's disease brains: evidence for disease causation and treatment with small-molecule inhibitors. Sci Adv. 2019. Link
Short summary of the cited reference is in preparation.
[523] Scher JU, Sczesnak A, Longman RS et al. Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis. eLife. 2013. Link
Short summary of the cited reference is in preparation.
[524] Vaziri ND, Yuan J, Khazaeli M et al. Disintegration of colonic epithelial tight junction in uremia. Am J Nephrol. 2013. Link
Short summary of the cited reference is in preparation.
[525] Pasini E, Aquilani R, Testa C et al. Pathogenic gut flora in patients with chronic heart failure. JACC Heart Fail. 2016. Link
Short summary of the cited reference is in preparation.
[526] Anand S, Mande SS. Diet, microbiota and gut-lung connection. Front Microbiol. 2018. Link
Short summary of the cited reference is in preparation.
[541] Knight R, Vrbanac A, Taylor BC et al. Best practices for analysing microbiomes. Nat Rev Microbiol. 2018. Link
Short summary of the cited reference is in preparation.
[542] McDonald D, Hyde E, Debelius JW et al. American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems. 2018. Link
Short summary of the cited reference is in preparation.
[543] Allaband C, McDonald D, Vázquez-Baeza Y et al. Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians. Clin Gastroenterol Hepatol. 2019. Link
Short summary of the cited reference is in preparation.
[545] Walsham NE, Sherwood RA. Fecal calprotectin in inflammatory bowel disease. Clin Exp Gastroenterol. 2016. Link
Short summary of the cited reference is in preparation.
[546] Scheffler L, Crane A, Heyne H et al. Widely Used Commercial ELISA Does Not Detect Precursor of Haptoglobin2, but Recognizes Properdin as a Potential Second Member of the Zonulin Family. Front Endocrinol. 2018. Link
Short summary of the cited reference is in preparation.
[547] Rezaie A, Buresi M, Lembo A et al. Hydrogen and methane-based breath testing in gastrointestinal disorders: The North American Consensus. Am J Gastroenterol. 2017. Link
Short summary of the cited reference is in preparation.
[548] Eisenhofer R, Minich JJ, Marotz C, Cooper A, Knight R, Weyrich LS. Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations. Trends Microbiol. 2019. Link
Short summary of the cited reference is in preparation.
[549] Karstens L, Asquith M, Davin S et al. Controlling for Contaminants in Low-Biomass 16S rRNA Gene Sequencing Experiments. mSystems. 2019. Link
Short summary of the cited reference is in preparation.
[558] Kennedy KM, de Goffau MC, Perez-Muñoz ME et al. Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature. 2023. Link
Short summary of the cited reference is in preparation.
[559] Drossman DA, Hasler WL. Rome IV — Functional GI Disorders: Disorders of Gut-Brain Interaction. Gastroenterology. 2016. Link
Short summary of the cited reference is in preparation.
[560] Thomas RL, Jiang L, Adams JS et al. Vitamin D Metabolites and the Gut Microbiome in Older Men. Nat Commun. 2020. Link
Short summary of the cited reference is in preparation.
[561] Hill C, Guarner F, Reid G et al. The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic. Nat Rev Gastroenterol Hepatol. 2014. Link
Short summary of the cited reference is in preparation.
[562] Su GL, Ko CW, Bercik P et al. AGA Clinical Practice Guidelines on the Role of Probiotics in the Management of Gastrointestinal Disorders. Gastroenterology. 2020. Link
Short summary of the cited reference is in preparation.
[563] Gibson GR, Hutkins R, Sanders ME et al. Expert consensus document: The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics. Nat Rev Gastroenterol Hepatol. 2017. Link
Short summary of the cited reference is in preparation.
[564] Salminen S, Collado MC, Endo A et al. The International Scientific Association of Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of postbiotics. Nat Rev Gastroenterol Hepatol. 2021. Link
Short summary of the cited reference is in preparation.
[565] Wilson BC, Vatanen T, Cutfield WS, O'Sullivan JM. The Super-Donor Phenomenon in Fecal Microbiota Transplantation. Front Cell Infect Microbiol. 2019. Link
Short summary of the cited reference is in preparation.
[588] Ahmed S, Spence JD. Mediterranean diet, the gut microbiome and meditation: a systematic review. Nutrients. 2022. Link
Short summary of the cited reference is in preparation.
[592] Mutlu EA, Comba IY, Cho T et al. Inhalational exposure to particulate matter air pollution alters the composition of the gut microbiome. Environ Pollut. 2018. Link
Short summary of the cited reference is in preparation.
[593] Duan H, Yu L, Tian F et al. Gut microbiota: A target for heavy metal toxicity and a probiotic protective strategy. Sci Total Environ. 2020. Link
Short summary of the cited reference is in preparation.
[599] Bokulich NA, Chung J, Battaglia T et al. Antibiotics, birth mode, and diet shape microbiome maturation during early life. Sci Transl Med. 2016. Link
Short summary of the cited reference is in preparation.
[600] Imhann F, Bonder MJ, Vich Vila A et al. Proton pump inhibitors affect the gut microbiome. Gut. 2016. Link
Short summary of the cited reference is in preparation.
[601] Targownik LE, Fisher DA, Saini SD. AGA Clinical Practice Update on De-Prescribing of Proton Pump Inhibitors: Expert Review. Gastroenterology. 2022. Link
Short summary of the cited reference is in preparation.
[605] Plottel CS, Blaser MJ. Microbiome and malignancy. Cell Host Microbe. 2011. Link
Short summary of the cited reference is in preparation.
[609] Berg G, Rybakova D, Fischer D et al. Microbiome definition re-visited: old concepts and new challenges. Microbiome. 2020. Link
Short summary of the cited reference is in preparation.
[610] Sender R, Fuchs S, Milo R. Revised estimates for the number of human and bacteria cells in the body. PLoS Biol. 2016. Link
Short summary of the cited reference is in preparation.
[612] Earle KA, Billings G, Sigal M et al. Quantitative imaging of gut microbiota spatial organization. Cell Host Microbe. 2015. Link
Short summary of the cited reference is in preparation.
[613] Smith PM, Howitt MR, Panikov N et al. The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis. Science. 2013. Link
Short summary of the cited reference is in preparation.
[615] Atarashi K, Tanoue T, Oshima K et al. Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota. Nature. 2013. Link
Short summary of the cited reference is in preparation.
[617] Lindell AE, Zimmermann-Kogadeeva M, Patil KR. Multimodal interactions of drugs, natural compounds and pollutants with the gut microbiota. Nat Rev Microbiol. 2022. Link
Short summary of the cited reference is in preparation.
[619] Mishra A, Lai GC, Yao LJ et al. Microbial exposure during early human development primes fetal immune cells. Cell. 2021. Link
Short summary of the cited reference is in preparation.
[623] Stewart CJ, Ajami NJ, O'Brien JL et al. Temporal development of the gut microbiome in early childhood from the TEDDY study. Nature. 2018. Link
Short summary of the cited reference is in preparation.
[624] von Hertzen L, Hanski I, Haahtela T. Natural immunity. Biodiversity loss and inflammatory diseases are two global megatrends that might be related. EMBO Rep. 2011. Link
Short summary of the cited reference is in preparation.
[625] Fitzstevens JL, Smith KC, Hagadorn JI et al. Systematic review of the human milk microbiota. Nutr Clin Pract. 2017. Link
Short summary of the cited reference is in preparation.
[626] Biagi E, Nylund L, Candela M et al. Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians. PLoS One. 2010. Link
Short summary of the cited reference is in preparation.
[628] Rothschild D, Weissbrod O, Barkan E et al. Environment dominates over host genetics in shaping human gut microbiota. Nature. 2018. Link
Short summary of the cited reference is in preparation.
[629] Kurilshikov A, Medina-Gomez C, Bacigalupe R et al. Large-scale association analyses identify host factors influencing human gut microbiome composition. Nat Genet. 2021. Link
Short summary of the cited reference is in preparation.
[630] Cortese R, Lu L, Yu Y et al. Epigenome-Microbiome crosstalk: a potential new paradigm influencing neonatal susceptibility to disease. Epigenetics. 2016. Link
Short summary of the cited reference is in preparation.
[631] Asnicar F, Berry SE, Valdes AM et al. Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals. Nat Med. 2021. Link
Short summary of the cited reference is in preparation.
[632] Berry SE, Valdes AM, Drew DA et al. Human postprandial responses to food and potential for precision nutrition. Nat Med. 2020. Link
Short summary of the cited reference is in preparation.
[634] Schmitt FCF, Brenner T, Uhle F et al. Gut microbiome patterns correlate with higher postoperative complication rates after pancreatic surgery. BMC Microbiol. 2019. Link
Short summary of the cited reference is in preparation.
[636] Barton W, Penney NC, Cronin O et al. The microbiome of professional athletes differs from that of more sedentary subjects in composition and particularly at the functional metabolic level. Gut. 2018. Link
Short summary of the cited reference is in preparation.
[638] Chaix A, Manoogian ENC, Melkani GC, Panda S. Time-Restricted Eating to Prevent and Manage Chronic Metabolic Diseases. Annu Rev Nutr. 2019. Link
Short summary of the cited reference is in preparation.
[640] Park BJ, Tsunetsugu Y, Kasetani T et al. The physiological effects of Shinrin-yoku (taking in the forest atmosphere or forest bathing): evidence from field experiments in 24 forests across Japan. Environ Health Prev Med. 2010. Link
Short summary of the cited reference is in preparation.
[2614] Chassaing B, Compher C, Bonhomme B et al. Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome. Gastroenterology. 2022. Link
Short summary of the cited reference is in preparation.
[2615] Sutton EF, Beyl R, Early KS et al. Early Time-Restricted Feeding Improves Insulin Sensitivity, Blood Pressure, and Oxidative Stress Even without Weight Loss in Men with Prediabetes. Cell Metabolism. 2018. Link
Short summary of the cited reference is in preparation.
[2616] Wilkinson MJ, Manoogian ENC, Zadourian A et al. Ten-Hour Time-Restricted Eating Reduces Weight, Blood Pressure, and Atherogenic Lipids in Patients with Metabolic Syndrome. Cell Metabolism. 2020. Link
Short summary of the cited reference is in preparation.
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Short summary of the cited reference is in preparation.
[2619] McGill CR, Fulgoni VL, Devareddy L. Ten-Year Trends in Fiber and Whole Grain Intakes and Food Sources for the United States Population: National Health and Nutrition Examination Survey 2001-2010. Nutrients. 2015. Link
Short summary of the cited reference is in preparation.
[2620] Alderete TL, Jones RB, Chen Z et al. Exposure to traffic-related air pollution and the composition of the gut microbiota in overweight and obese adolescents. Environmental Research. 2018. Link
Short summary of the cited reference is in preparation.
[2713] Marshall BJ, Warren JR. Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration. The Lancet. 1984. Link
Short summary of the cited reference is in preparation.
[2714] Alang N, Kelly CR. Weight Gain After Fecal Microbiota Transplantation. Open Forum Infectious Diseases. 2015. Link
Short summary of the cited reference is in preparation.
[2715] Eng J, Kleinman WA, Singh L, Singh G, Raufman JP. Isolation and characterization of exendin-4, an exendin-3 analogue, from Heloderma suspectum venom. Journal of Biological Chemistry. 1992. Link
Short summary of the cited reference is in preparation.
[2716] Wilding JPH, Batterham RL, Calanna S, et al. Once-Weekly Semaglutide in Adults with Overweight or Obesity (STEP 1). New England Journal of Medicine. 2021. Link
Short summary of the cited reference is in preparation.
[2717] (experimental study, high-fat diet-induced obese mice). Effects of semaglutide on metabolism and gut microbiota in high-fat diet-induced obese mice. Frontiers in Pharmacology. 2025. Link
Short summary of the cited reference is in preparation.
[2718] Tomás-Barberán FA, García-Villalba R, González-Sarrías A, Selma MV, Espín JC. Urolithin metabotypes from ellagitannin-rich foods and association with cardiometabolic risk. Molecular Nutrition & Food Research. 2017. Link
Short summary of the cited reference is in preparation.
[2719] Setchell KDR, Clerici C. Equol: history, chemistry, and formation. The Journal of Nutrition. 2010. Link
Short summary of the cited reference is in preparation.
[2720] Zeevi D, Korem T, Zmora N, et al. Personalized Nutrition by Prediction of Glycemic Responses. Cell. 2015. Link
Short summary of the cited reference is in preparation.
[2723] Kapil V, Haydar SMA, Pearl V, Lundberg JO, Weitzberg E, Ahluwalia A. Physiological role for nitrate-reducing oral bacteria in blood pressure control. Free Radical Biology and Medicine. 2013. Link
Short summary of the cited reference is in preparation.
[2724] Bondonno CP, Liu AH, Croft KD, Considine MJ, Puddey IB, Woodman RJ, Hodgson JM. Antibacterial mouthwash blunts oral nitrate reduction and increases blood pressure in treated hypertensive men and women. American Journal of Hypertension. 2015. Link
Short summary of the cited reference is in preparation.
[2725] Vanhatalo A, Blackwell JR, L'Heureux JE, Williams DW, Smith A, van der Giezen M, Winyard PG, Kelly J, Jones AM. Nitrate-responsive oral microbiome modulates nitric oxide homeostasis and blood pressure in humans. Free Radical Biology and Medicine. 2018. Link
Short summary of the cited reference is in preparation.
E.2 Lectures complémentaires pour les lecteurs non spécialistes
Les suggestions de lecture ci-dessous s'adressent aux lecteurs qui souhaitent replacer dans son contexte le tableau esquissé par ce livre – il s'agit d'ouvrages narratifs et de vulgarisation scientifique, non d'articles de revues. Le critère de sélection est la fiabilité scientifique : cette liste exclut les titres qui substituent des promesses de niveau marketing aux preuves cliniques. Éditions facilement disponibles au format imprimé ou numérique.
Ouvrages de vulgarisation scientifique
- Spector T. The Diet Myth. 2015 – toujours l'une des meilleures synthèses pour le grand public
- Knight R. Follow Your Gut. 2015 (TED Books)
- Sonnenburg J, Sonnenburg E. The Good Gut. 2015
- Enders G. Gut: The Inside Story of Our Body's Most Underrated Organ. 2015
Sites web fiables
- ISAPP (International Scientific Association for Probiotics and Prebiotics) : isappscience.org
- American Gut Project : humanfoodproject.com/americangut
- WGO (World Gastroenterology Organisation) Global Guidelines : worldgastroenterology.org
Podcasts
- Stanford Center for Continuing Medical Education podcasts
- American Gastroenterological Association podcasts
E.3 Lectures complémentaires pour les cliniciens
Recommandations destinées au lectorat clinique : revues systématiques, recommandations cliniques et documents de consensus professionnels qui présentent la médecine du microbiome à un niveau de détail pertinent pour la pratique. La sélection privilégie les publications de 2022–2025 (à l'exclusion des travaux fondateurs déjà classiques). Toutes les entrées comportent un accès PubMed/DOI.
Revues systématiques récentes
- Synthèses annuelles sur le microbiome dans Nat Rev Gastroenterol Hepatol
- Lancet Gastroenterology & Hepatology
Revues clés
- Gut (BMJ)
- Gastroenterology (AGA)
- Cell Host & Microbe
- Microbiome (BMC)
- Nature Reviews Gastroenterology & Hepatology
Congrès et sociétés savantes
- Réunions annuelles de l'ISAPP
- DDW (Digestive Disease Week)
- UEG Week (United European Gastroenterology Week)
- Sociétés nationales de gastro-entérologie
- Consortiums régionaux sur le microbiome
Documents de consensus comme cadre de référence
- Documents de consensus de l'ISAPP sur les probiotiques, prébiotiques et postbiotiques ([@ref-561, @ref-563, @ref-564])
- Recommandations ESCMID, ECCO sur les MICI (IBD)
- Critères de Rome IV pour les troubles fonctionnels intestinaux